[Cyberduck-trac] [Cyberduck] #10385: Missing and duplicated files in list

[Cyberduck]

#10385: Missing and duplicated files in list
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 Reporter:  gavinband    |         Owner:  dkocher
     Type:  defect       |        Status:  reopened
 Priority:  normal       |     Milestone:
Component:  sftp         |       Version:  6.6.2
 Severity:  major        |    Resolution:
 Keywords:               |  Architecture:  Intel
 Platform:  macOS 10.13  |
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Comment (by gavinband):

 Hi,
 Thanks - please try now: tanzania-gwas at ftp.malariagen.net, accessed by
 sftp using the ssh key you've sent.  The problem can be seen in:

 /home/datarelease/data/callsets/genotyped/Tanzania_GWAS-2.5M_b37/master/

 As reported the problems are

 1: the list of files is incorrect (e.g. files with
 'Tanzania_GWAS-2.5M_b37_chr19.vcf.gz' in appear twice in the list,
 including at the top after sorting by filename), while other files
 including the file  'Tanzania_GWAS-2.5M_b37_chr0X.vcf.gz' is missing.

 2: There is equally a problem when downloading the whole folder of files -
 I think, but am not sure, that this has to do with trying to download
 Tanzania_GWAS-2.5M_b37_chr0X.vcf.gz but actually downloading
 Tanzania_GWAS-2.5M_b37_chr19.vcf.gz.  (Sorry I realise this is vague, I
 can re-download to be more specific about this aspect of the problem, but
 maybe solving problem #1 will fix this.)

 I am using Cyberduck 6.9.3 on a 2014 Macbook Pro running macOS High Sierra
 (10.13.6).

 (Please note this data is restricted access - fine to download/access for
 testing purposes but please delete afterwards.)

 Many thanks for your help with this,
 Gavin.

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Ticket URL: <https://trac.cyberduck.io/ticket/10385#comment:13>
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